Variant report

Variant	rs9814160
Chromosome Location	chr3:156600967-156600968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13323819	1.00[AMR][1000 genomes]
rs1397191	1.00[AMR][1000 genomes]
rs16826731	1.00[AMR][1000 genomes]
rs1991618	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28695987	1.00[AMR][1000 genomes]
rs56234943	1.00[AMR][1000 genomes]
rs57472927	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60659904	1.00[AMR][1000 genomes]
rs61607068	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6763606	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6779040	1.00[AMR][1000 genomes]
rs6797924	1.00[AMR][1000 genomes]
rs73873709	1.00[AMR][1000 genomes]
rs73873711	1.00[AMR][1000 genomes]
rs7609776	1.00[AMR][1000 genomes]
rs7610539	1.00[AMR][1000 genomes]
rs7610749	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620352	1.00[AMR][1000 genomes]
rs7620432	1.00[AMR][1000 genomes]
rs9829961	1.00[AMR][1000 genomes]
rs9834930	1.00[AMR][1000 genomes]
rs9835232	1.00[AMR][1000 genomes]
rs9837209	1.00[AMR][1000 genomes]
rs9841118	1.00[AMR][1000 genomes]
rs9853712	1.00[AMR][1000 genomes]
rs9855517	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9866769	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9870674	1.00[AMR][1000 genomes]
rs9873467	1.00[AMR][1000 genomes]
rs9873640	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9883478	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156598200-156609600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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