Variant report

Variant	rs9837209
Chromosome Location	chr3:156455823-156455824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156449917..156452057-chr3:156455354..156457337,2	MCF-7	breast:
2	chr3:156455142..156458106-chr3:156458193..156461275,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TIPARP-2	chr3:156455820-156456057	l_2510_chr3:156455819-156459241_testes

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13323819	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1397191	1.00[AMR][1000 genomes]
rs16826731	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1991618	1.00[AMR][1000 genomes]
rs28695987	1.00[AMR][1000 genomes]
rs56234943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57472927	1.00[AMR][1000 genomes]
rs60659904	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61607068	1.00[AMR][1000 genomes]
rs6763606	1.00[AMR][1000 genomes]
rs6779040	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6797924	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873709	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873711	1.00[AMR][1000 genomes]
rs7609776	1.00[AMR][1000 genomes]
rs7610539	1.00[AMR][1000 genomes]
rs7610749	1.00[AMR][1000 genomes]
rs7620352	1.00[AMR][1000 genomes]
rs7620432	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9814160	1.00[AMR][1000 genomes]
rs9829961	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9834930	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9835232	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9841118	1.00[AMR][1000 genomes]
rs9853712	1.00[AMR][1000 genomes]
rs9855517	1.00[AMR][1000 genomes]
rs9866769	1.00[AMR][1000 genomes]
rs9870674	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9873467	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9873640	1.00[AMR][1000 genomes]
rs9883478	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156445600-156459600	Weak transcription	Brain Substantia Nigra	brain
2	chr3:156446400-156464600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:156446400-156467000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:156447800-156457400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:156447800-156457400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:156447800-156464200	Weak transcription	HSMM	muscle
7	chr3:156447800-156464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:156447800-156465000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:156447800-156467000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:156448200-156462800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:156448200-156464200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:156448400-156464600	Weak transcription	NHEK	skin
13	chr3:156450400-156459200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:156450800-156458600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:156450800-156461600	Weak transcription	HepG2	liver
16	chr3:156454200-156457000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:156455400-156457400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:156455600-156456000	Enhancers	Fetal Intestine Small	intestine
19	chr3:156455600-156456400	Enhancers	Fetal Intestine Large	intestine
20	chr3:156455600-156456600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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