Variant report

Variant	rs16826731
Chromosome Location	chr3:156404141-156404142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156399372..156402148-chr3:156402188..156404792,4	MCF-7	breast:
2	chr3:156396313..156400179-chr3:156402067..156404958,4	K562	blood:
3	chr3:156402576..156405420-chr3:156534127..156536182,3	MCF-7	breast:
4	chr3:156404124..156405692-chr3:156554376..156556285,2	K562	blood:
5	chr3:156401581..156406675-chr3:156542145..156546248,5	MCF-7	breast:
6	chr3:156390425..156393975-chr3:156403365..156406512,4	K562	blood:
7	chr3:156401966..156404393-chr3:156414302..156416945,2	K562	blood:
8	chr3:156402796..156405445-chr3:156530779..156533531,2	MCF-7	breast:
9	chr3:156401467..156404144-chr3:156522121..156524308,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000197980	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000240875	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13323819	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1397191	0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1991618	1.00[AMR][1000 genomes]
rs28695987	1.00[AMR][1000 genomes]
rs56231331	0.81[AFR][1000 genomes]
rs56234943	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57472927	1.00[AMR][1000 genomes]
rs60659904	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61607068	1.00[AMR][1000 genomes]
rs6763606	1.00[AMR][1000 genomes]
rs6779040	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6797924	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873711	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7609776	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7610539	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7610749	1.00[AMR][1000 genomes]
rs7620352	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620432	0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651446	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs9814160	1.00[AMR][1000 genomes]
rs9829961	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9834930	0.81[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9835232	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9837209	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9841118	1.00[AMR][1000 genomes]
rs9853712	1.00[AMR][1000 genomes]
rs9855517	1.00[AMR][1000 genomes]
rs9866769	1.00[AMR][1000 genomes]
rs9870674	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9873467	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9873640	1.00[AMR][1000 genomes]
rs9883478	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156394000-156436000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:156394200-156412600	Weak transcription	Placenta	Placenta
3	chr3:156394400-156404800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr3:156394400-156411800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:156395600-156438600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:156395800-156408600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:156396200-156407400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:156396400-156407400	Weak transcription	Esophagus	oesophagus
9	chr3:156396400-156407400	Weak transcription	Spleen	Spleen
10	chr3:156396400-156408800	Weak transcription	Colonic Mucosa	Colon
11	chr3:156396400-156413000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:156396400-156414400	Weak transcription	Thymus	Thymus
13	chr3:156396400-156424800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:156396600-156441000	Weak transcription	Lung	lung
15	chr3:156397800-156413000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:156398400-156408800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:156398600-156409600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:156399200-156404200	Genic enhancers	Osteobl	bone
19	chr3:156399200-156405800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr3:156399200-156407400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:156399200-156407400	Weak transcription	Fetal Intestine Large	intestine
22	chr3:156399200-156412400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr3:156399600-156407400	Weak transcription	Fetal Brain Female	brain
24	chr3:156399800-156407400	Weak transcription	Gastric	stomach
25	chr3:156399800-156408600	Genic enhancers	NHEK	skin
26	chr3:156399800-156410200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:156399800-156411200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:156399800-156411400	Weak transcription	Fetal Thymus	thymus
29	chr3:156399800-156411800	Enhancers	Brain Hippocampus Middle	brain
30	chr3:156399800-156413200	Weak transcription	Fetal Muscle Leg	muscle
31	chr3:156400000-156412200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:156400400-156411600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr3:156400600-156405800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:156401200-156406400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr3:156401600-156409400	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr3:156401800-156404400	Enhancers	HepG2	liver
37	chr3:156402000-156404600	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr3:156402200-156404200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:156402200-156404200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:156402200-156406600	Enhancers	Stomach Mucosa	stomach
41	chr3:156402400-156404200	Enhancers	Brain Cingulate Gyrus	brain
42	chr3:156402600-156404400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:156402600-156404600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr3:156402600-156405000	Enhancers	Primary T cells from cord blood	blood
45	chr3:156402600-156405400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr3:156402600-156405600	Weak transcription	Left Ventricle	heart
47	chr3:156402600-156405800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr3:156402600-156407400	Weak transcription	Right Atrium	heart
49	chr3:156402600-156410800	Enhancers	Liver	Liver
50	chr3:156402800-156404200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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