Variant report

Variant	rs28695987
Chromosome Location	chr3:156381078-156381079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156377079..156379353-chr3:156380561..156383322,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-7	chr3:156359231-156383752	predAs_chen_BG181400_1

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13323819	1.00[AMR][1000 genomes]
rs1397191	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16826731	1.00[AMR][1000 genomes]
rs1991618	1.00[AMR][1000 genomes]
rs56234943	1.00[AMR][1000 genomes]
rs57472927	1.00[AMR][1000 genomes]
rs60659904	1.00[AMR][1000 genomes]
rs61607068	1.00[AMR][1000 genomes]
rs6763606	1.00[AMR][1000 genomes]
rs6779040	1.00[AMR][1000 genomes]
rs6797924	1.00[AMR][1000 genomes]
rs73873709	1.00[AMR][1000 genomes]
rs73873711	1.00[AMR][1000 genomes]
rs7609776	1.00[AMR][1000 genomes]
rs7610539	1.00[AMR][1000 genomes]
rs7610749	1.00[AMR][1000 genomes]
rs7620352	1.00[AMR][1000 genomes]
rs7620432	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9814160	1.00[AMR][1000 genomes]
rs9829961	1.00[AMR][1000 genomes]
rs9834930	1.00[AMR][1000 genomes]
rs9835232	1.00[AMR][1000 genomes]
rs9837209	1.00[AMR][1000 genomes]
rs9841118	1.00[AMR][1000 genomes]
rs9853712	1.00[AMR][1000 genomes]
rs9855517	1.00[AMR][1000 genomes]
rs9866769	1.00[AMR][1000 genomes]
rs9870674	1.00[AMR][1000 genomes]
rs9873467	1.00[AMR][1000 genomes]
rs9873640	1.00[AMR][1000 genomes]
rs9883478	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156375600-156381800	Weak transcription	K562	blood
2	chr3:156376600-156382400	Weak transcription	Fetal Kidney	kidney
3	chr3:156376600-156383800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:156376600-156385600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:156377400-156381600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:156377400-156382200	Weak transcription	HSMMtube	muscle
7	chr3:156377400-156386000	Weak transcription	Psoas Muscle	Psoas
8	chr3:156377600-156382200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:156377600-156382200	Weak transcription	Brain Germinal Matrix	brain
10	chr3:156377600-156383000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:156378600-156381800	Enhancers	GM12878-XiMat	blood
12	chr3:156379200-156381400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:156379400-156382000	Weak transcription	Primary B cells from cord blood	blood
14	chr3:156379800-156381400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr3:156379800-156381600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr3:156379800-156381600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:156380000-156381200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:156380000-156381200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:156380000-156381600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:156380600-156384200	Enhancers	Primary monocytes fromperipheralblood	blood

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