Variant report

Variant	rs1397191
Chromosome Location	chr3:156376601-156376602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156270798..156273116-chr3:156373903..156376666,2	K562	blood:
2	chr3:156271563..156273116-chr3:156374621..156376666,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-7	chr3:156359231-156383752	predAs_chen_BG181400_1

Variant related genes	Relation type
ENSG00000114850	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13323819	0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16826731	0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1991618	1.00[AMR][1000 genomes]
rs28695987	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56231331	0.86[AFR][1000 genomes]
rs56234943	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57472927	1.00[AMR][1000 genomes]
rs60659904	1.00[AMR][1000 genomes]
rs61607068	1.00[AMR][1000 genomes]
rs6763606	1.00[AMR][1000 genomes]
rs6779040	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6797924	0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873709	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873711	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7609776	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7610539	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7610749	1.00[AMR][1000 genomes]
rs7620352	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620432	0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651446	0.89[YRI][hapmap]
rs9814160	1.00[AMR][1000 genomes]
rs9829961	0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9834930	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9835232	1.00[AMR][1000 genomes]
rs9837209	1.00[AMR][1000 genomes]
rs9841118	1.00[AMR][1000 genomes]
rs9853712	1.00[AMR][1000 genomes]
rs9855517	1.00[AMR][1000 genomes]
rs9866769	1.00[AMR][1000 genomes]
rs9870674	1.00[AMR][1000 genomes]
rs9873467	1.00[AMR][1000 genomes]
rs9873640	1.00[AMR][1000 genomes]
rs9883478	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156375000-156378600	Weak transcription	GM12878-XiMat	blood
2	chr3:156375400-156377400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr3:156375400-156377600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:156375600-156381800	Weak transcription	K562	blood
5	chr3:156376200-156377400	Enhancers	HSMMtube	muscle
6	chr3:156376200-156377600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:156376600-156377400	Enhancers	Psoas Muscle	Psoas
8	chr3:156376600-156377600	Enhancers	Brain Germinal Matrix	brain
9	chr3:156376600-156382400	Weak transcription	Fetal Kidney	kidney
10	chr3:156376600-156383800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:156376600-156385600	Weak transcription	Rectal Mucosa Donor 29	rectum

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