Variant report

Variant	rs59077786
Chromosome Location	chr3:156563753-156563754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13317783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1991618	0.81[AFR][1000 genomes]
rs56231331	1.00[AMR][1000 genomes]
rs57472927	0.83[AFR][1000 genomes]
rs61607068	0.81[AFR][1000 genomes]
rs6763606	0.81[AFR][1000 genomes]
rs6766799	1.00[AMR][1000 genomes]
rs6782196	1.00[AMR][1000 genomes]
rs6783136	1.00[AMR][1000 genomes]
rs73875742	1.00[AMR][1000 genomes]
rs73875746	1.00[AMR][1000 genomes]
rs7625660	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9810073	1.00[AMR][1000 genomes]
rs9811311	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9815241	1.00[AMR][1000 genomes]
rs9824348	1.00[AMR][1000 genomes]
rs9825950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9839563	1.00[AMR][1000 genomes]
rs9855517	0.83[AFR][1000 genomes]
rs9866769	0.81[AFR][1000 genomes]
rs9870882	1.00[AMR][1000 genomes]
rs9873640	0.81[AFR][1000 genomes]
rs9876941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9883215	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156561800-156565200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:156561800-156565200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:156561800-156565200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:156561800-156565200	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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