Variant report

Variant	rs9839563
Chromosome Location	chr3:156350226-156350227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156322092..156324579-chr3:156349375..156354165,4	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13317783	1.00[AMR][1000 genomes]
rs56097380	0.85[AFR][1000 genomes]
rs56231331	1.00[AMR][1000 genomes]
rs59077786	1.00[AMR][1000 genomes]
rs6766799	1.00[AMR][1000 genomes]
rs6782196	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6783136	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875742	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7619192	0.84[AFR][1000 genomes]
rs7625660	1.00[AMR][1000 genomes]
rs9810073	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9811311	1.00[AMR][1000 genomes]
rs9815241	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9824348	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9825950	1.00[AMR][1000 genomes]
rs9870882	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs9876941	1.00[AMR][1000 genomes]
rs9883215	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156345600-156350600	Enhancers	HSMMtube	muscle
2	chr3:156346600-156350800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:156347000-156352000	Enhancers	Fetal Muscle Leg	muscle
4	chr3:156347600-156353800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:156348000-156350800	Weak transcription	Left Ventricle	heart
6	chr3:156348800-156351200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:156348800-156352600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:156348800-156360600	Weak transcription	Right Atrium	heart
9	chr3:156349000-156350800	Weak transcription	Psoas Muscle	Psoas
10	chr3:156349200-156351200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:156349400-156350400	Weak transcription	Pancreas	Pancrea
12	chr3:156349400-156350800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:156349400-156350800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:156349400-156351600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:156349400-156361000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:156349600-156350800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:156349600-156350800	Weak transcription	Osteobl	bone
18	chr3:156349600-156351200	Weak transcription	HMEC	breast
19	chr3:156349600-156354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:156349600-156355200	Weak transcription	NHEK	skin
21	chr3:156350000-156350600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:156350000-156351400	Enhancers	Fetal Heart	heart
23	chr3:156350200-156351200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:156350200-156351400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:156350200-156352800	Enhancers	HSMM	muscle
26	chr3:156350200-156354400	Enhancers	K562	blood

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