Variant report

Variant	rs6766799
Chromosome Location	chr3:156338684-156338685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156336566..156339046-chr3:156355636..156358467,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13317783	1.00[AMR][1000 genomes]
rs56231331	1.00[AMR][1000 genomes]
rs59077786	1.00[AMR][1000 genomes]
rs6782196	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6783136	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875742	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875746	1.00[AMR][1000 genomes]
rs9810073	1.00[AMR][1000 genomes]
rs9815241	1.00[AMR][1000 genomes]
rs9824348	1.00[AMR][1000 genomes]
rs9825950	1.00[AMR][1000 genomes]
rs9839563	1.00[AMR][1000 genomes]
rs9870882	1.00[AMR][1000 genomes]
rs9876941	1.00[AMR][1000 genomes]
rs9883215	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877684	chr3:156294987-156344825	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156332000-156339200	Enhancers	Osteobl	bone
2	chr3:156334800-156339200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:156336400-156345800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:156337600-156339000	Enhancers	K562	blood
5	chr3:156337600-156339200	Enhancers	NHEK	skin
6	chr3:156337800-156338800	Enhancers	Fetal Intestine Small	intestine
7	chr3:156337800-156339200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:156338000-156338800	Enhancers	NH-A	brain
9	chr3:156338000-156339000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:156338000-156339200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:156338000-156339200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:156338000-156339200	Enhancers	HMEC	breast
13	chr3:156338000-156339200	Enhancers	NHDF-Ad	bronchial
14	chr3:156338000-156339600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:156338200-156338800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:156338200-156339000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:156338200-156339200	Enhancers	Lung	lung
18	chr3:156338400-156338800	Enhancers	Fetal Intestine Large	intestine
19	chr3:156338400-156339000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:156338400-156339200	Enhancers	Esophagus	oesophagus
21	chr3:156338400-156339200	Enhancers	HSMM	muscle
22	chr3:156338400-156343400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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