Variant report

Variant	rs9824348
Chromosome Location	chr3:156347551-156347552
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156346639..156349927-chr3:156351146..156353666,3	K562	blood:
2	chr3:156347156..156349827-chr3:156350754..156354562,3	K562	blood:
3	chr3:156346980..156348606-chr3:156355155..156357044,2	K562	blood:
4	chr3:156346249..156348861-chr3:156392186..156393904,2	MCF-7	breast:
5	chr3:156347077..156349787-chr3:156893431..156895606,2	K562	blood:
6	chr3:156335907..156337985-chr3:156346780..156349354,2	MCF-7	breast:
7	chr3:156346087..156347803-chr3:156543900..156546820,2	MCF-7	breast:
8	chr3:156327608..156330418-chr3:156345086..156347689,2	MCF-7	breast:
9	chr3:156346319..156347875-chr3:156354876..156356759,2	MCF-7	breast:
10	chr3:156344548..156346713-chr3:156347054..156349702,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163659	Chromatin interaction
ENSG00000197980	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13317783	1.00[AMR][1000 genomes]
rs56231331	1.00[AMR][1000 genomes]
rs59077786	1.00[AMR][1000 genomes]
rs6766799	1.00[AMR][1000 genomes]
rs6782196	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6783136	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875742	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875746	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7625660	1.00[AMR][1000 genomes]
rs9810073	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9811311	1.00[AMR][1000 genomes]
rs9815241	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9825950	1.00[AMR][1000 genomes]
rs9839563	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9870882	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs9876941	1.00[AMR][1000 genomes]
rs9883215	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156339200-156347800	Weak transcription	Esophagus	oesophagus
2	chr3:156343600-156349600	Enhancers	NHEK	skin
3	chr3:156344200-156347800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156344400-156350200	Weak transcription	K562	blood
5	chr3:156345400-156349600	Enhancers	HMEC	breast
6	chr3:156345600-156347800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:156345600-156349600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:156345600-156349600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:156345600-156350600	Enhancers	HSMMtube	muscle
10	chr3:156345800-156347600	Enhancers	Fetal Intestine Small	intestine
11	chr3:156345800-156348600	Enhancers	Hela-S3	cervix
12	chr3:156345800-156349600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:156346000-156348000	Enhancers	Stomach Mucosa	stomach
14	chr3:156346000-156349400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:156346000-156349400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:156346000-156349600	Enhancers	Osteobl	bone
17	chr3:156346000-156349800	Enhancers	HSMM	muscle
18	chr3:156346200-156347600	Weak transcription	NH-A	brain
19	chr3:156346200-156347800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:156346400-156347600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr3:156346400-156348400	Weak transcription	Fetal Kidney	kidney
22	chr3:156346600-156347600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr3:156346600-156347800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:156346600-156348000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:156346600-156350800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:156346800-156347800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:156346800-156350000	Weak transcription	Fetal Heart	heart
28	chr3:156347000-156352000	Enhancers	Fetal Muscle Leg	muscle
29	chr3:156347200-156347600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr3:156347200-156347600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:156347200-156348000	Enhancers	Left Ventricle	heart
32	chr3:156347200-156348400	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr3:156347200-156348800	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr3:156347200-156349000	Enhancers	Psoas Muscle	Psoas
35	chr3:156347200-156349200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:156347200-156349400	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr3:156347200-156349600	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr3:156347400-156348000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:156347400-156348800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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