Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13317783	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16826938	0.87[ASW][hapmap];1.00[MEX][hapmap]
rs1991618	0.87[ASW][hapmap];1.00[MEX][hapmap];0.83[AFR][1000 genomes]
rs4474996	1.00[MEX][hapmap]
rs56231331	1.00[AMR][1000 genomes]
rs57472927	0.86[AFR][1000 genomes]
rs59077786	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61607068	0.83[AFR][1000 genomes]
rs6763606	0.83[AFR][1000 genomes]
rs6782196	1.00[AMR][1000 genomes]
rs6797924	1.00[MEX][hapmap]
rs73875746	1.00[AMR][1000 genomes]
rs7620432	1.00[MEX][hapmap]
rs7625660	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9824348	1.00[AMR][1000 genomes]
rs9825950	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9839563	1.00[AMR][1000 genomes]
rs9855517	0.86[AFR][1000 genomes]
rs9859716	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs9863865	1.00[YRI][hapmap]
rs9866769	0.83[AFR][1000 genomes]
rs9867597	1.00[YRI][hapmap]
rs9870882	1.00[AMR][1000 genomes]
rs9873640	0.83[AFR][1000 genomes]
rs9876941	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9883215	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9883478	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156586400-156591400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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