Variant report
| Variant | rs9863865 |
|---|---|
| Chromosome Location | chr3:156661593-156661594 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs13317783 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs59077786 | 1.00[AMR][1000 genomes] |
| rs7617473 | 0.82[AFR][1000 genomes] |
| rs7625660 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9811311 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9825950 | 1.00[AMR][1000 genomes] |
| rs9867597 | 1.00[YRI][hapmap] |
| rs9876941 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs9883215 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829765 | chr3:156568263-156718496 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv592120 | chr3:156626091-156691604 | Enhancers Weak transcription Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
