Variant report

Variant	rs9825950
Chromosome Location	chr3:156505857-156505858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156503620..156506032-chr3:156837954..156840511,2	K562	blood:
2	chr3:156498434..156501596-chr3:156502537..156507306,7	K562	blood:
3	chr3:156503226..156505868-chr3:156506509..156508157,2	MCF-7	breast:
4	chr3:156497858..156501596-chr3:156502537..156507306,7	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13317783	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16826938	0.87[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap]
rs1991618	0.87[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.86[AFR][1000 genomes]
rs4474996	1.00[MEX][hapmap]
rs56231331	1.00[AMR][1000 genomes]
rs57472927	0.83[AFR][1000 genomes]
rs59077786	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61607068	0.86[AFR][1000 genomes]
rs6763606	0.86[AFR][1000 genomes]
rs6766799	1.00[AMR][1000 genomes]
rs6782196	1.00[AMR][1000 genomes]
rs6783136	1.00[AMR][1000 genomes]
rs6797924	1.00[MEX][hapmap]
rs73875742	1.00[AMR][1000 genomes]
rs73875746	1.00[AMR][1000 genomes]
rs7620432	1.00[MEX][hapmap]
rs7625660	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9810073	1.00[AMR][1000 genomes]
rs9811311	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9815241	1.00[AMR][1000 genomes]
rs9824348	1.00[AMR][1000 genomes]
rs9839563	1.00[AMR][1000 genomes]
rs9855517	0.83[AFR][1000 genomes]
rs9859716	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap]
rs9863865	1.00[YRI][hapmap]
rs9866769	0.86[AFR][1000 genomes]
rs9870882	1.00[AMR][1000 genomes]
rs9873640	0.86[AFR][1000 genomes]
rs9876941	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9883215	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9883478	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156494600-156510800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:156499000-156507400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:156500200-156508800	Enhancers	HMEC	breast
4	chr3:156500400-156510800	Weak transcription	Stomach Mucosa	stomach
5	chr3:156501000-156510800	Weak transcription	Gastric	stomach
6	chr3:156502000-156506600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:156502200-156507600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:156502400-156510600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:156502600-156510800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:156502800-156509000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:156502800-156510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:156502800-156510800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr3:156502800-156528400	Weak transcription	Esophagus	oesophagus
14	chr3:156502800-156529000	Weak transcription	Liver	Liver
15	chr3:156503000-156507200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:156504000-156506000	Genic enhancers	NHEK	skin
17	chr3:156504000-156507200	Enhancers	K562	blood
18	chr3:156504000-156507400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:156504000-156509200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:156504200-156506200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:156504200-156508800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:156504200-156516400	Weak transcription	Primary B cells from cord blood	blood
23	chr3:156504600-156507000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:156504800-156508600	Enhancers	HSMM	muscle
25	chr3:156505000-156506600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:156505000-156507000	Enhancers	Hela-S3	cervix
27	chr3:156505000-156507400	Enhancers	NHLF	lung
28	chr3:156505000-156510600	Weak transcription	GM12878-XiMat	blood
29	chr3:156505200-156510600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:156505200-156512400	Weak transcription	Pancreas	Pancrea
31	chr3:156505600-156506000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:156505600-156506000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr3:156505600-156506000	Flanking Active TSS	HSMMtube	muscle
34	chr3:156505600-156506600	Enhancers	Placenta Amnion	Placenta Amnion
35	chr3:156505600-156507200	Enhancers	HUVEC	blood vessel
36	chr3:156505600-156507400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:156505600-156507400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr3:156505800-156506000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:156505800-156506000	Flanking Active TSS	NHDF-Ad	bronchial
40	chr3:156505800-156506400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:156505800-156506600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr3:156505800-156506600	Flanking Active TSS	NH-A	brain
43	chr3:156505800-156506600	Flanking Active TSS	Osteobl	bone
44	chr3:156505800-156507400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr3:156505800-156507400	Flanking Active TSS	A549	lung

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