Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11710516	0.82[ASW][hapmap]
rs13314352	1.00[ASW][hapmap];0.86[YRI][hapmap]
rs16826938	1.00[MEX][hapmap]
rs182936	0.82[ASW][hapmap]
rs1991618	1.00[MEX][hapmap]
rs28719920	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28881287	0.81[AFR][1000 genomes]
rs6441097	1.00[ASW][hapmap];0.91[MKK][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs6441098	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6783490	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs6797924	1.00[MEX][hapmap]
rs6798879	0.82[YRI][hapmap]
rs6807765	0.86[YRI][hapmap]
rs73873737	0.88[AFR][1000 genomes]
rs7620432	1.00[MEX][hapmap]
rs7638335	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs9289974	0.93[YRI][hapmap]
rs9809108	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs9811311	1.00[MEX][hapmap]
rs9820893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9836414	0.90[ASW][hapmap];0.91[MKK][hapmap];0.86[YRI][hapmap]
rs9850381	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9859716	1.00[MEX][hapmap]
rs9865537	0.86[YRI][hapmap]
rs9883215	1.00[MEX][hapmap]
rs9883478	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156586400-156591400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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