Variant report

Variant	rs9289974
Chromosome Location	chr3:156693848-156693849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13314352	0.93[YRI][hapmap]
rs4474996	0.93[YRI][hapmap]
rs6441097	0.86[YRI][hapmap]
rs6441098	0.93[YRI][hapmap]
rs6783490	0.87[YRI][hapmap]
rs6798879	0.92[YRI][hapmap]
rs6807765	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs73873753	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7638335	0.87[YRI][hapmap]
rs9809108	0.87[YRI][hapmap]
rs9831523	0.91[YRI][hapmap]
rs9836414	0.93[YRI][hapmap]
rs9850381	0.93[YRI][hapmap]
rs9865537	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156692200-156694000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:156692600-156694000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:156692600-156698600	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:156693000-156695200	Weak transcription	GM12878-XiMat	blood
5	chr3:156693600-156694200	Enhancers	Primary B cells from cord blood	blood
6	chr3:156693800-156694800	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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