Variant report

Variant	rs9831523
Chromosome Location	chr3:156655388-156655389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13314352	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs28881287	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58895069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59980662	0.94[AFR][1000 genomes]
rs6441097	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs6441098	0.82[YRI][hapmap]
rs6783490	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6798879	0.91[YRI][hapmap]
rs6807765	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873737	1.00[AMR][1000 genomes]
rs7638335	0.91[YRI][hapmap]
rs9289974	0.91[YRI][hapmap]
rs9809108	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs9814973	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9836414	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850381	0.82[YRI][hapmap]
rs9862136	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9865537	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv592120	chr3:156626091-156691604	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links