Variant report

Variant	rs6441098
Chromosome Location	chr3:156557816-156557817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13314352	0.86[YRI][hapmap]
rs28719920	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28881287	0.81[AFR][1000 genomes]
rs4474996	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441097	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs6783490	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs6798879	0.83[YRI][hapmap]
rs6807765	0.87[YRI][hapmap]
rs73873737	0.88[AFR][1000 genomes]
rs7638335	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs9289974	0.93[YRI][hapmap]
rs9809108	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs9820893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9831523	0.82[YRI][hapmap]
rs9836414	0.86[YRI][hapmap]
rs9850381	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9865537	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156545000-156559600	Weak transcription	Pancreas	Pancrea
2	chr3:156545800-156558000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:156554000-156558200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:156554400-156558400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:156554400-156561000	Weak transcription	Aorta	Aorta
6	chr3:156555400-156558800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:156555400-156560400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:156555400-156560400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:156555400-156560400	Weak transcription	Osteobl	bone
10	chr3:156555400-156560800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:156555600-156560600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:156555600-156560600	Weak transcription	NHDF-Ad	bronchial
13	chr3:156556800-156558200	Weak transcription	HepG2	liver
14	chr3:156557200-156561000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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