Variant report

Variant	rs9850381
Chromosome Location	chr3:156616581-156616582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13314352	0.86[YRI][hapmap]
rs28719920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4474996	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441097	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs6441098	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6783490	0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs6798879	0.83[YRI][hapmap]
rs6807765	0.87[YRI][hapmap]
rs73873737	0.81[AFR][1000 genomes]
rs7638335	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs9289974	0.93[YRI][hapmap]
rs9809108	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs9820893	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9831523	0.82[YRI][hapmap]
rs9836414	0.86[YRI][hapmap]
rs9865537	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3405756	chr3:156616308-156618631	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156611600-156621400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:156612000-156621200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:156613000-156617000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:156616000-156616800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:156616000-156617000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:156616200-156616600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:156616200-156617000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:156616200-156617200	Enhancers	HSMM	muscle
9	chr3:156616200-156617600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:156616200-156617800	Enhancers	HSMMtube	muscle
11	chr3:156616400-156616600	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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