Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156392375..156393977-chr3:156569489..156571215,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163659	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13314352	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs28719920	0.81[AFR][1000 genomes]
rs28881287	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4474996	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs58895069	1.00[AMR][1000 genomes]
rs59980662	0.81[AFR][1000 genomes]
rs6441097	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441098	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs6783490	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6807765	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs73873737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638335	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9289974	0.87[YRI][hapmap]
rs9814973	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9820893	0.86[AFR][1000 genomes]
rs9831523	0.91[YRI][hapmap]
rs9836414	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs9850381	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs9862136	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9865537	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156566400-156570400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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