Variant report

Variant	rs28881287
Chromosome Location	chr3:156594920-156594921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4474996	0.81[AFR][1000 genomes]
rs58895069	1.00[AMR][1000 genomes]
rs6441097	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441098	0.81[AFR][1000 genomes]
rs6783490	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6807765	1.00[AMR][1000 genomes]
rs73873737	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638335	0.93[AFR][1000 genomes]
rs9809108	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9814973	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9820893	0.82[AFR][1000 genomes]
rs9836414	1.00[AMR][1000 genomes]
rs9862136	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156592800-156597200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:156594400-156598200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links