Variant report

Variant	rs9870882
Chromosome Location	chr3:156352755-156352756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156351719..156355141-chr3:156359193..156362259,3	K562	blood:
2	chr3:156322092..156324579-chr3:156349375..156354165,4	K562	blood:
3	chr3:156347156..156349827-chr3:156350754..156354562,3	K562	blood:
4	chr3:156350925..156353491-chr3:156369407..156372280,2	K562	blood:
5	chr3:156346639..156349927-chr3:156351146..156353666,3	K562	blood:
6	chr3:156351082..156355136-chr3:156390629..156393709,3	K562	blood:

Variant related genes	Relation type
ENSG00000163659	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13317783	1.00[AMR][1000 genomes]
rs56231331	1.00[AMR][1000 genomes]
rs59077786	1.00[AMR][1000 genomes]
rs6766799	1.00[AMR][1000 genomes]
rs6782196	1.00[AMR][1000 genomes]
rs6783136	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs73875742	1.00[AMR][1000 genomes]
rs73875746	1.00[AMR][1000 genomes]
rs7625660	1.00[AMR][1000 genomes]
rs9810073	1.00[AMR][1000 genomes]
rs9811311	1.00[AMR][1000 genomes]
rs9815241	1.00[AMR][1000 genomes]
rs9824348	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs9825950	1.00[AMR][1000 genomes]
rs9839563	1.00[AMR][1000 genomes]
rs9876941	1.00[AMR][1000 genomes]
rs9883215	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156347600-156353800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:156348800-156360600	Weak transcription	Right Atrium	heart
3	chr3:156349400-156361000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156349600-156354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:156349600-156355200	Weak transcription	NHEK	skin
6	chr3:156350200-156352800	Enhancers	HSMM	muscle
7	chr3:156350200-156354400	Enhancers	K562	blood
8	chr3:156350800-156353200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:156350800-156354000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:156351000-156353000	Enhancers	HSMMtube	muscle
11	chr3:156351200-156353000	Enhancers	Ovary	ovary
12	chr3:156351600-156352800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:156351600-156354000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:156351800-156356600	Weak transcription	Osteobl	bone
15	chr3:156351800-156361000	Weak transcription	Fetal Stomach	stomach
16	chr3:156352000-156353800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:156352200-156353800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:156352600-156352800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:156352600-156353200	Enhancers	GM12878-XiMat	blood
20	chr3:156352600-156353400	Enhancers	Primary B cells from peripheral blood	blood
21	chr3:156352600-156353400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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