Variant report

Variant	rs6782196
Chromosome Location	chr3:156344826-156344827
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156343774..156345768-chr3:156390702..156393170,2	K562	blood:
2	chr3:156340680..156342377-chr3:156344823..156347090,2	K562	blood:
3	chr3:156344548..156346713-chr3:156347054..156349702,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13317783	1.00[AMR][1000 genomes]
rs56231331	1.00[AMR][1000 genomes]
rs59077786	1.00[AMR][1000 genomes]
rs6766799	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6783136	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875742	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875746	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7625660	1.00[AMR][1000 genomes]
rs9810073	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9811311	1.00[AMR][1000 genomes]
rs9815241	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9824348	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9825950	1.00[AMR][1000 genomes]
rs9839563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9870882	1.00[AMR][1000 genomes]
rs9876941	1.00[AMR][1000 genomes]
rs9883215	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156336400-156345800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:156338800-156345800	Weak transcription	Fetal Intestine Small	intestine
3	chr3:156339200-156346000	Weak transcription	HSMM	muscle
4	chr3:156339200-156347800	Weak transcription	Esophagus	oesophagus
5	chr3:156342200-156345000	Weak transcription	Fetal Heart	heart
6	chr3:156343600-156349600	Enhancers	NHEK	skin
7	chr3:156344000-156345600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:156344000-156345800	Weak transcription	Fetal Intestine Large	intestine
9	chr3:156344000-156345800	Weak transcription	Hela-S3	cervix
10	chr3:156344200-156345400	Weak transcription	Placenta	Placenta
11	chr3:156344200-156345600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:156344200-156345800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:156344200-156346000	Weak transcription	NHLF	lung
14	chr3:156344200-156347000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:156344200-156347800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:156344400-156345400	Weak transcription	HepG2	liver
17	chr3:156344400-156345400	Weak transcription	HMEC	breast
18	chr3:156344400-156345800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:156344400-156346600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:156344400-156350200	Weak transcription	K562	blood
21	chr3:156344600-156345600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:156344800-156346000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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