Variant report

Variant	rs9825882
Chromosome Location	chr3:99906250-99906251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10049383	0.80[CEU][hapmap]
rs10212525	0.81[CEU][hapmap]
rs11537816	0.82[ASW][hapmap];0.80[CEU][hapmap];0.96[GIH][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1214372	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs1214373	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs13064704	0.81[CEU][hapmap]
rs13069311	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs13323143	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs1489816	0.81[CEU][hapmap]
rs17392948	0.86[CEU][hapmap];0.96[GIH][hapmap]
rs277636	0.85[JPT][hapmap]
rs277652	0.85[JPT][hapmap]
rs277654	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs28394036	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790877	0.91[CEU][hapmap]
rs6802422	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs7610486	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs7618677	0.85[JPT][hapmap]
rs7620228	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs7627991	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs7637157	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs923470	0.81[CEU][hapmap]
rs923471	0.81[CEU][hapmap]
rs9289985	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9816538	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823908	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs9828079	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs9833888	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs9833980	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs9837602	0.81[CEU][hapmap]
rs9839910	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9851645	0.81[CEU][hapmap]
rs9853522	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854260	0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9860290	0.82[GIH][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs9863738	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs9864437	0.81[CEU][hapmap];0.80[GIH][hapmap]
rs9873878	0.81[CEU][hapmap]
rs9875878	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880795	0.85[JPT][hapmap]
rs9882337	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv523836	chr3:99906250-99906751	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99899000-99907800	Weak transcription	Psoas Muscle	Psoas
2	chr3:99899000-99911000	Weak transcription	Aorta	Aorta
3	chr3:99905000-99906800	Weak transcription	Fetal Stomach	stomach
4	chr3:99905000-99907400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:99905000-99907800	Weak transcription	Left Ventricle	heart
6	chr3:99905400-99908600	Weak transcription	Placenta	Placenta
7	chr3:99905600-99906800	Weak transcription	HepG2	liver
8	chr3:99905600-99908000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:99905600-99910400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:99905600-99910400	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:99905800-99907800	Weak transcription	K562	blood
12	chr3:99905800-99910600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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