Variant report

Variant	rs9839910
Chromosome Location	chr3:99907945-99907946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99907272..99908973-chr3:99914282..99915902,2	K562	blood:
2	chr3:99907736..99909748-chr3:99916221..99918037,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10212525	0.81[CEU][hapmap]
rs11537816	0.80[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1214372	0.85[JPT][hapmap]
rs1214373	0.85[JPT][hapmap]
rs13069311	0.81[CEU][hapmap]
rs13323143	0.81[CEU][hapmap]
rs1489816	0.81[CEU][hapmap]
rs17392948	0.86[CEU][hapmap]
rs277636	0.85[JPT][hapmap]
rs277652	0.85[JPT][hapmap]
rs277654	0.82[JPT][hapmap]
rs28394036	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790877	0.84[CEU][hapmap]
rs6802422	0.81[CEU][hapmap]
rs7610486	0.81[CEU][hapmap]
rs7618677	0.85[JPT][hapmap]
rs7620228	0.81[CEU][hapmap]
rs7627991	0.81[CEU][hapmap]
rs7637157	0.85[JPT][hapmap]
rs923471	0.81[CEU][hapmap]
rs9289985	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9816538	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823908	0.81[CEU][hapmap]
rs9825882	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828079	0.81[CEU][hapmap]
rs9833888	0.81[CEU][hapmap]
rs9833980	0.81[CEU][hapmap]
rs9837602	0.81[CEU][hapmap]
rs9853522	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854260	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9860290	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs9863738	0.85[JPT][hapmap]
rs9864437	0.81[CEU][hapmap]
rs9875878	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880795	0.85[JPT][hapmap]
rs9882337	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99899000-99911000	Weak transcription	Aorta	Aorta
2	chr3:99905400-99908600	Weak transcription	Placenta	Placenta
3	chr3:99905600-99908000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:99905600-99910400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:99905600-99910400	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:99905800-99910600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:99907400-99908800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:99907800-99908000	Enhancers	Spleen	Spleen
9	chr3:99907800-99908800	Enhancers	Left Ventricle	heart
10	chr3:99907800-99908800	Enhancers	Psoas Muscle	Psoas

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