Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11917333	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11922083	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13064390	0.82[ASN][1000 genomes]
rs13065193	0.82[ASN][1000 genomes]
rs13065887	0.87[ASN][1000 genomes]
rs13077690	0.83[ASN][1000 genomes]
rs13098091	0.82[JPT][hapmap]
rs1452220	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1452222	0.89[ASN][1000 genomes]
rs1485672	0.85[ASN][1000 genomes]
rs17235410	0.81[ASN][1000 genomes]
rs4974124	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4974127	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974128	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974182	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs755322	0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7626886	0.98[ASN][1000 genomes]
rs7627149	0.89[ASN][1000 genomes]
rs7635184	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9810491	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56223800-56225400	Weak transcription	HSMM	muscle
2	chr3:56224000-56225400	Weak transcription	HSMMtube	muscle
3	chr3:56224200-56226000	Enhancers	Fetal Intestine Large	intestine
4	chr3:56224200-56226000	Enhancers	Fetal Intestine Small	intestine
5	chr3:56225000-56225600	Enhancers	Small Intestine	intestine
6	chr3:56225000-56225800	Flanking Active TSS	Duodenum Mucosa	Duodenum

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