Variant report

Variant	rs11922083
Chromosome Location	chr3:56279032-56279033
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11719222	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11917333	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11919266	0.81[EUR][1000 genomes]
rs13058777	0.84[EUR][1000 genomes]
rs13064390	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13065193	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13065887	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077690	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1452220	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1452222	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1485672	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17235410	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2123181	0.83[EUR][1000 genomes]
rs34392996	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34502592	0.85[EUR][1000 genomes]
rs34699897	0.85[EUR][1000 genomes]
rs34715192	0.85[EUR][1000 genomes]
rs34770968	0.89[EUR][1000 genomes]
rs35110829	0.92[EUR][1000 genomes]
rs35659930	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4974124	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4974127	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974128	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974182	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56135751	0.82[EUR][1000 genomes]
rs755322	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7626886	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7627149	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9810491	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9830173	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9867216	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9873480	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56254800-56280600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:56272800-56291400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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