Variant report

Variant	rs9867216
Chromosome Location	chr3:56268744-56268745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11130508	0.85[EUR][1000 genomes]
rs11130509	0.85[EUR][1000 genomes]
rs11719222	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11917333	0.80[EUR][1000 genomes]
rs11922083	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13064390	0.85[EUR][1000 genomes]
rs13065193	0.85[EUR][1000 genomes]
rs13065887	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13076397	0.85[EUR][1000 genomes]
rs13077690	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13085545	0.85[EUR][1000 genomes]
rs13096861	0.85[EUR][1000 genomes]
rs1452220	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1452222	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17825379	0.85[EUR][1000 genomes]
rs34718158	0.85[EUR][1000 genomes]
rs35110829	0.80[EUR][1000 genomes]
rs4325896	0.86[EUR][1000 genomes]
rs4974124	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4974127	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974128	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4974182	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62253617	0.85[EUR][1000 genomes]
rs755322	0.82[EUR][1000 genomes]
rs7626886	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7627149	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7635184	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9810491	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9873480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56252000-56272200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:56254800-56280600	Weak transcription	H9 Cell Line	embryonic stem cell

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