Variant report

Variant	rs62253617
Chromosome Location	chr3:56316855-56316856
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11130508	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130509	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130510	0.82[AMR][1000 genomes]
rs11130512	0.82[AMR][1000 genomes]
rs11706502	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11708280	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11712446	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11714882	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11715774	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11715860	0.82[AMR][1000 genomes]
rs11716710	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11719222	0.86[EUR][1000 genomes]
rs11919266	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13061518	0.82[AMR][1000 genomes]
rs13076397	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13085545	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13096861	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17825379	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1869156	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2123181	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2873303	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34392996	0.80[EUR][1000 genomes]
rs34502592	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34699897	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34715192	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34718158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34750355	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35110829	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35215252	0.82[AMR][1000 genomes]
rs35659930	0.81[EUR][1000 genomes]
rs35958142	0.89[EUR][1000 genomes]
rs36044157	0.86[AMR][1000 genomes]
rs4325896	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974133	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974193	0.82[AMR][1000 genomes]
rs56135751	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56229179	0.89[EUR][1000 genomes]
rs73086420	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7619653	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7639248	0.89[EUR][1000 genomes]
rs9799155	0.82[AMR][1000 genomes]
rs9810491	0.85[EUR][1000 genomes]
rs9867216	0.85[EUR][1000 genomes]
rs9873480	0.85[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56306000-56319200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56311600-56317000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:56311600-56317000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:56312200-56318400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:56312200-56319400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:56314400-56319200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:56315800-56317400	Enhancers	HUVEC	blood vessel
8	chr3:56316400-56322600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:56316600-56318200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr3:56316600-56318400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr3:56316800-56318200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:56316800-56318400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:56316800-56318800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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