Variant report

Variant	rs7619653
Chromosome Location	chr3:56323446-56323447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11130508	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130509	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130516	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11706502	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11708654	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11714882	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11715774	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11716710	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11719222	0.81[EUR][1000 genomes]
rs13076397	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13085545	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13096861	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17825379	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17825409	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17825415	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17825421	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1869156	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1947348	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2167618	0.86[AFR][1000 genomes]
rs2873303	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34407400	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34502592	0.81[EUR][1000 genomes]
rs34699897	0.83[EUR][1000 genomes]
rs34715192	0.81[EUR][1000 genomes]
rs34718158	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34750355	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35958142	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4325896	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4585165	0.85[AFR][1000 genomes]
rs4974133	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56229179	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62253617	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62255862	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62255863	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6762680	0.86[AFR][1000 genomes]
rs6777792	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6781931	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6784908	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6793746	0.82[EUR][1000 genomes]
rs6797275	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73086420	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7638645	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7639248	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7641157	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7641435	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs766695	0.81[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7619653	ERC2	cis	cerebellum	SCAN
rs7619653	C3orf51	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56318600-56324000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:56319600-56323600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:56319800-56324400	Weak transcription	HUVEC	blood vessel
4	chr3:56320000-56324800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:56321600-56323600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr3:56322400-56325400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:56323000-56324000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:56323000-56325400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr3:56323200-56325000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:56323200-56325400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:56323200-56325800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:56323200-56336800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:56323200-56337000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:56323400-56325000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:56323400-56326400	Enhancers	GM12878-XiMat	blood
16	chr3:56323400-56336600	Weak transcription	H1 Cell Line	embryonic stem cell

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