Variant report

Variant	rs2873303
Chromosome Location	chr3:56343544-56343545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56341386..56344229-chr3:56362146..56365044,2	K562	blood:
2	chr3:56338889..56341193-chr3:56342498..56344708,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11130508	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130509	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130516	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11706502	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11708654	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11714882	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716710	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13076397	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13085545	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13096861	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13098894	0.81[ASN][1000 genomes]
rs17825379	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17825409	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17825415	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17825421	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1869156	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947348	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34407400	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34502592	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34699897	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34715192	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34718158	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34750355	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35958142	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4325896	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974133	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56229179	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62253617	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62255862	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255863	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6777792	0.84[EUR][1000 genomes]
rs6781931	0.84[EUR][1000 genomes]
rs6784908	0.84[EUR][1000 genomes]
rs6793746	0.84[EUR][1000 genomes]
rs6797275	0.84[EUR][1000 genomes]
rs73086420	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7611307	0.81[ASN][1000 genomes]
rs7619653	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7638645	0.84[EUR][1000 genomes]
rs7639248	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7641157	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7641435	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs766695	0.83[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2873303	ERC2	cis	cerebellum	SCAN
rs2873303	C3orf51	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56337800-56344200	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:56338800-56343600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:56341400-56344200	Enhancers	Fetal Stomach	stomach
4	chr3:56341800-56343800	Enhancers	Fetal Heart	heart
5	chr3:56342600-56343800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:56342600-56343800	Enhancers	Colon Smooth Muscle	Colon
7	chr3:56342600-56343800	Enhancers	Rectal Smooth Muscle	rectum
8	chr3:56343200-56344000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:56343400-56343800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:56343400-56344600	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links