Variant report

Variant	rs4974133
Chromosome Location	chr3:56341098-56341099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56338889..56341193-chr3:56342498..56344708,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11130508	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130509	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130516	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11706502	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11708654	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11714882	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715774	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716710	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13076397	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13085545	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13096861	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13098894	0.81[ASN][1000 genomes]
rs17825379	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17825409	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17825415	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17825421	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1869156	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947348	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2873303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34407400	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34502592	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34699897	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34715192	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34718158	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34750355	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35958142	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4325896	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56229179	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62253617	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62255862	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255863	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6777792	0.83[EUR][1000 genomes]
rs6781931	0.83[EUR][1000 genomes]
rs6784908	0.83[EUR][1000 genomes]
rs6793746	0.83[EUR][1000 genomes]
rs6797275	0.83[EUR][1000 genomes]
rs73086420	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7611307	0.81[ASN][1000 genomes]
rs7619653	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7638645	0.83[EUR][1000 genomes]
rs7639248	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7641157	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7641435	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs766695	0.82[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56331600-56341800	Weak transcription	Fetal Heart	heart
2	chr3:56337800-56344200	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:56338200-56343400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:56338400-56343200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:56338400-56343400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:56338800-56343600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:56340400-56341200	Enhancers	GM12878-XiMat	blood

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