Variant report

Variant	rs1869156
Chromosome Location	chr3:56343351-56343352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56341386..56344229-chr3:56362146..56365044,2	K562	blood:
2	chr3:56338889..56341193-chr3:56342498..56344708,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11130508	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130509	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130516	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11706502	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11708654	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11714882	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715774	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716710	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13076397	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13085545	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13096861	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13098894	0.81[ASN][1000 genomes]
rs1349615	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17825379	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17825409	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17825415	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17825421	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1947348	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2123183	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2873303	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34407400	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34502592	0.81[ASN][1000 genomes]
rs34699897	0.81[ASN][1000 genomes]
rs34715192	0.81[ASN][1000 genomes]
rs34718158	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34750355	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35958142	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4325896	0.86[ASN][1000 genomes]
rs4974133	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56229179	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62253617	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62255862	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62255863	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73086420	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7611307	0.81[ASN][1000 genomes]
rs7619653	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7639248	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7641043	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7641157	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7641435	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs766695	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1869156	ERC2	cis	cerebellum	SCAN
rs1869156	ARHGEF3	cis	lymphoblastoid	seeQTL
rs1869156	C3orf51	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56337800-56344200	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:56338200-56343400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:56338400-56343400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:56338800-56343600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:56341400-56344200	Enhancers	Fetal Stomach	stomach
6	chr3:56341800-56343800	Enhancers	Fetal Heart	heart
7	chr3:56342600-56343800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:56342600-56343800	Enhancers	Colon Smooth Muscle	Colon
9	chr3:56342600-56343800	Enhancers	Rectal Smooth Muscle	rectum
10	chr3:56343200-56344000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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