Variant report

Variant	rs2123183
Chromosome Location	chr3:56374916-56374917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:56369203..56372004-chr3:56372011..56375332,3	K562	blood:
2	chr3:56374174..56375293-chr3:56480529..56481653,5	MCF-7	breast:
3	chr3:56374176..56374999-chr3:56478634..56479183,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11130516	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11708654	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1349615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17825409	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17825415	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17825421	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1869156	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1947348	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34407400	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35958142	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62255862	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62255863	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6777792	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6781931	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6784908	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6793746	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6797275	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7638645	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7639248	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7641043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7641157	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7641435	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs766695	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2123183	ERC2	cis	cerebellum	SCAN
rs2123183	C3orf51	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56373600-56375000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:56374400-56375400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:56374600-56376600	Weak transcription	Fetal Brain Female	brain
4	chr3:56374600-56377800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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