Variant report

Variant	rs7641157
Chromosome Location	chr3:56360253-56360254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11130508	0.86[ASN][1000 genomes]
rs11130509	0.86[ASN][1000 genomes]
rs11130510	0.80[EUR][1000 genomes]
rs11130512	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11130513	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11130515	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11130516	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11706502	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11707219	0.86[ASN][1000 genomes]
rs11708654	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11710376	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11710542	0.82[EUR][1000 genomes]
rs11714882	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11715774	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11715860	0.82[EUR][1000 genomes]
rs11716710	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11718333	0.82[ASN][1000 genomes]
rs13061518	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13076397	0.83[ASN][1000 genomes]
rs13083082	0.80[ASN][1000 genomes]
rs13085545	0.86[ASN][1000 genomes]
rs13093276	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13094881	0.81[ASN][1000 genomes]
rs13096861	0.86[ASN][1000 genomes]
rs13098894	0.91[ASN][1000 genomes]
rs1349615	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17825379	0.83[ASN][1000 genomes]
rs17825409	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17825415	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17825421	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1869156	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1947348	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123183	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2316898	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2873303	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34407400	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34750355	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35033578	0.83[ASN][1000 genomes]
rs35866364	0.82[ASN][1000 genomes]
rs35958142	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4246674	0.86[ASN][1000 genomes]
rs4246675	0.83[ASN][1000 genomes]
rs4475006	0.84[ASN][1000 genomes]
rs4974133	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4974134	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4974136	0.81[ASN][1000 genomes]
rs4974193	0.82[EUR][1000 genomes]
rs4974197	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4974202	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4974210	0.86[ASN][1000 genomes]
rs55952137	0.83[ASN][1000 genomes]
rs56229179	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62253627	0.80[ASN][1000 genomes]
rs62255862	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62255863	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62255872	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6765986	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6776240	0.84[ASN][1000 genomes]
rs6777792	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6781931	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6784908	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6790858	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6791227	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6793746	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6797275	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6802458	0.86[ASN][1000 genomes]
rs73086420	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7611307	0.91[ASN][1000 genomes]
rs7615409	0.86[ASN][1000 genomes]
rs7619653	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7628943	0.84[ASN][1000 genomes]
rs7637946	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7638645	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7639248	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7641043	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7641435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9799155	0.81[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7641157	C3orf51	cis	cerebellum	SCAN
rs7641157	ERC2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56358600-56364400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:56358800-56361600	Weak transcription	Right Atrium	heart
3	chr3:56359000-56363400	Weak transcription	Fetal Heart	heart

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