Variant report

Variant	rs4475006
Chromosome Location	chr3:56427303-56427304
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11130516	0.83[ASN][1000 genomes]
rs11707219	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11708654	0.82[ASN][1000 genomes]
rs11718333	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11920229	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13083082	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13094881	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13098894	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17825409	0.83[ASN][1000 genomes]
rs17825415	0.83[ASN][1000 genomes]
rs17825421	0.83[ASN][1000 genomes]
rs1947348	0.84[ASN][1000 genomes]
rs2316898	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34407400	0.83[ASN][1000 genomes]
rs35033578	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35866364	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35947588	0.81[ASN][1000 genomes]
rs4076863	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4246674	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4246675	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4974136	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974202	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4974206	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4974210	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55952137	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62255862	0.83[ASN][1000 genomes]
rs62255863	0.83[ASN][1000 genomes]
rs6445787	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6776240	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6802458	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7611307	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7615409	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7628943	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7641157	0.84[ASN][1000 genomes]
rs7641435	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876816	chr3:56422771-56457705	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56422400-56427800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:56423600-56427400	Weak transcription	Adipose Nuclei	Adipose
3	chr3:56424000-56447400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:56426800-56428200	Enhancers	Ovary	ovary

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