Variant report

Variant	rs4076863
Chromosome Location	chr3:56406967-56406968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11707219	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11710335	0.84[EUR][1000 genomes]
rs11711928	0.84[EUR][1000 genomes]
rs11713347	0.83[EUR][1000 genomes]
rs11718333	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11718664	0.81[EUR][1000 genomes]
rs11920229	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11921059	0.82[EUR][1000 genomes]
rs11924629	0.82[EUR][1000 genomes]
rs11929325	0.84[EUR][1000 genomes]
rs13078566	0.81[EUR][1000 genomes]
rs13083082	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13089019	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13094881	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13098894	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2316898	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34018952	0.83[EUR][1000 genomes]
rs34158034	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34825657	0.83[EUR][1000 genomes]
rs34967455	0.84[EUR][1000 genomes]
rs35033578	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35835987	0.82[EUR][1000 genomes]
rs35866364	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35947588	0.84[EUR][1000 genomes]
rs35977673	0.82[EUR][1000 genomes]
rs4246674	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4246675	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4475006	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974136	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4974200	0.81[EUR][1000 genomes]
rs4974202	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974204	0.82[EUR][1000 genomes]
rs4974205	0.82[EUR][1000 genomes]
rs4974206	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974210	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55952137	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60814962	0.81[EUR][1000 genomes]
rs6445787	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6776240	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6802458	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7610959	0.81[EUR][1000 genomes]
rs7611307	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7615409	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7628943	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7644975	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56390800-56410000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56400800-56407200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:56401200-56407000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:56405200-56408800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:56405400-56407800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:56406000-56407000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:56406000-56407400	Weak transcription	Adipose Nuclei	Adipose
8	chr3:56406000-56407400	Weak transcription	Brain Substantia Nigra	brain
9	chr3:56406000-56407600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:56406400-56409800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:56406800-56408000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:56406800-56408200	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links