Variant report

Variant	rs2316898
Chromosome Location	chr3:56388799-56388800
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11130516	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11707219	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11708654	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11718333	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11718664	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11920229	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13083082	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13094881	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13098894	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17825409	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17825415	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17825421	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1947348	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34407400	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35033578	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35866364	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4076863	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4246674	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4246675	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4475006	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4974136	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4974200	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4974201	0.82[EUR][1000 genomes]
rs4974202	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4974203	0.82[EUR][1000 genomes]
rs4974206	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4974210	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55952137	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62255862	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62255863	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6445787	0.82[AMR][1000 genomes]
rs6776240	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6777792	0.85[EUR][1000 genomes]
rs6781931	0.86[EUR][1000 genomes]
rs6784908	0.86[EUR][1000 genomes]
rs6793746	0.85[EUR][1000 genomes]
rs6797275	0.86[EUR][1000 genomes]
rs6802458	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7610959	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7611307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7615409	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7628943	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7638645	0.85[EUR][1000 genomes]
rs7641157	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7641435	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56383200-56389600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:56387000-56391400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:56388400-56389200	Enhancers	Brain Hippocampus Middle	brain
4	chr3:56388400-56391000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:56388600-56389800	Weak transcription	H9 Cell Line	embryonic stem cell

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