Variant report

Variant	rs4974203
Chromosome Location	chr3:56390992-56390993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11710335	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11711109	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11711928	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11713347	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11718664	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11920229	0.81[EUR][1000 genomes]
rs11921059	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11922800	0.82[ASN][1000 genomes]
rs11924629	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11929325	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13078566	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13089019	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13098894	0.82[EUR][1000 genomes]
rs2316898	0.82[EUR][1000 genomes]
rs34018952	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34158034	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34713833	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34825657	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34967455	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35835987	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35947588	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35977673	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974138	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4974139	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4974200	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974201	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974202	0.82[EUR][1000 genomes]
rs4974204	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974205	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974206	0.81[EUR][1000 genomes]
rs4974211	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4974212	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55952137	0.81[AMR][1000 genomes]
rs60814962	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6445787	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6776240	0.82[AMR][1000 genomes]
rs7610959	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7611307	0.83[EUR][1000 genomes]
rs7637430	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7644975	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56387000-56391400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:56388400-56391000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56389000-56391800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:56389400-56391800	Enhancers	Liver	Liver
5	chr3:56389600-56391600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:56389600-56391800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:56389600-56392000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:56389800-56391600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:56389800-56391800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:56390000-56397200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:56390400-56401000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:56390600-56391400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:56390600-56391800	Enhancers	Ovary	ovary
14	chr3:56390600-56406800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:56390800-56410000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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