Variant report

Variant	rs11922800
Chromosome Location	chr3:56352547-56352548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11130510	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130512	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11130513	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11130515	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11708280	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11710335	0.80[ASN][1000 genomes]
rs11710376	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11710542	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11712446	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11715860	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11919266	0.84[EUR][1000 genomes]
rs11924629	0.80[ASN][1000 genomes]
rs13061518	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13078566	0.80[ASN][1000 genomes]
rs13093276	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2123181	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34392996	0.82[EUR][1000 genomes]
rs34502592	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34699897	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34713833	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34715192	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34770968	0.85[EUR][1000 genomes]
rs35215252	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35659930	0.83[EUR][1000 genomes]
rs35977673	0.80[ASN][1000 genomes]
rs36044157	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4974134	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4974193	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974197	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974201	0.82[ASN][1000 genomes]
rs4974203	0.82[ASN][1000 genomes]
rs4974204	0.80[ASN][1000 genomes]
rs4974205	0.80[ASN][1000 genomes]
rs56135751	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62253627	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62255872	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6765986	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6790858	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6791227	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7637946	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9799155	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56344000-56357400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:56349200-56357400	Weak transcription	Right Atrium	heart
3	chr3:56349200-56358000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:56349400-56353400	Weak transcription	Fetal Heart	heart
5	chr3:56350200-56354600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:56350200-56354800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:56350200-56356000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:56350400-56354400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:56351200-56354800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:56351400-56354800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:56351400-56355000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:56351600-56352600	Weak transcription	Fetal Brain Male	brain
13	chr3:56351600-56353600	Weak transcription	Ovary	ovary

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