Variant report

Variant	rs11708280
Chromosome Location	chr3:56329111-56329112
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11130508	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11130509	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11130510	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130512	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130513	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130515	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11710376	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11710542	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11712446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715860	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11718664	0.80[ASN][1000 genomes]
rs11919266	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11922800	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13061518	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13076397	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13085545	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13093276	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13096861	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17825379	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2123181	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34392996	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34502592	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34699897	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34713833	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34715192	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34718158	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34770968	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35110829	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35215252	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35659930	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36044157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4325896	0.86[AMR][1000 genomes]
rs4974134	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4974193	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974197	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974200	0.80[ASN][1000 genomes]
rs56135751	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62253617	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62253627	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255872	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6765986	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6790858	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6791227	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs755322	0.86[CEU][hapmap]
rs7610959	0.80[ASN][1000 genomes]
rs7637946	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9799155	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11708280	ERC2	cis	cerebellum	SCAN
rs11708280	C3orf51	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56323200-56336800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:56323200-56337000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:56323400-56336600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:56323600-56336600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:56325200-56337200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:56326200-56330000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:56326200-56336600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:56326200-56337200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:56326400-56329400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:56328200-56330200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:56328400-56329600	Active TSS	HSMMtube	muscle
12	chr3:56328600-56329600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:56328800-56336400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:56329000-56330600	Weak transcription	Fetal Brain Female	brain

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