Variant report

Variant	rs7610959
Chromosome Location	chr3:56386290-56386291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11130510	0.83[ASN][1000 genomes]
rs11130512	0.88[ASN][1000 genomes]
rs11130513	0.88[ASN][1000 genomes]
rs11130515	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11708280	0.80[ASN][1000 genomes]
rs11710335	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11710376	0.88[ASN][1000 genomes]
rs11710542	0.85[ASN][1000 genomes]
rs11711109	0.86[ASN][1000 genomes]
rs11711928	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11712446	0.80[ASN][1000 genomes]
rs11713347	0.81[EUR][1000 genomes]
rs11715860	0.83[ASN][1000 genomes]
rs11718333	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11718664	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921059	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11924629	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11929325	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13061518	0.88[ASN][1000 genomes]
rs13078566	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13083082	0.81[EUR][1000 genomes]
rs13089019	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13093276	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13094881	0.81[EUR][1000 genomes]
rs13098894	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2123181	0.80[ASN][1000 genomes]
rs2316898	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34018952	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34158034	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34713833	0.85[ASN][1000 genomes]
rs34825657	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34967455	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35215252	0.80[ASN][1000 genomes]
rs35835987	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35866364	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35947588	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35977673	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4076863	0.81[EUR][1000 genomes]
rs4974134	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4974136	0.81[EUR][1000 genomes]
rs4974138	0.86[ASN][1000 genomes]
rs4974139	0.86[ASN][1000 genomes]
rs4974193	0.83[ASN][1000 genomes]
rs4974197	0.88[ASN][1000 genomes]
rs4974200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974201	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974202	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4974203	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974204	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4974205	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4974211	0.86[ASN][1000 genomes]
rs4974212	0.86[ASN][1000 genomes]
rs60814962	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62253627	0.88[ASN][1000 genomes]
rs62255872	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6445787	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6765986	0.88[ASN][1000 genomes]
rs6790858	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6791227	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6807939	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7611307	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7637430	0.86[ASN][1000 genomes]
rs7637946	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7644975	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9799155	0.83[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7610959	ERC2	cis	cerebellum	SCAN
rs7610959	BAP1	cis	parietal	SCAN
rs7610959	C3orf51	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56383200-56389600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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