Variant report

Variant	rs13089019
Chromosome Location	chr3:56401863-56401864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11707219	0.83[EUR][1000 genomes]
rs11710335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11711109	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11711928	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11713347	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11718333	0.85[EUR][1000 genomes]
rs11718664	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11920229	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11921059	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11924629	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11929325	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13078566	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13083082	0.83[EUR][1000 genomes]
rs13094881	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34018952	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34158034	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34825657	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34967455	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35835987	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35866364	0.85[EUR][1000 genomes]
rs35947588	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35977673	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4076863	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4246674	0.83[EUR][1000 genomes]
rs4974136	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4974138	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974139	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974200	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974201	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974203	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974206	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4974210	0.83[EUR][1000 genomes]
rs4974211	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4974212	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55952137	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60814962	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6445787	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6776240	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7610959	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7615409	0.83[EUR][1000 genomes]
rs7628943	0.83[EUR][1000 genomes]
rs7637430	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7644975	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56390600-56406800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:56390800-56410000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:56399000-56402400	Enhancers	HSMMtube	muscle
4	chr3:56400200-56402000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:56400400-56405000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:56400600-56405000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:56400800-56402600	Weak transcription	Adipose Nuclei	Adipose
8	chr3:56400800-56407200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:56401000-56402600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:56401000-56405200	Weak transcription	Brain Anterior Caudate	brain
11	chr3:56401200-56402600	Weak transcription	Brain Angular Gyrus	brain
12	chr3:56401200-56402600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:56401200-56407000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:56401400-56402600	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:56401400-56402600	Weak transcription	Brain Substantia Nigra	brain
16	chr3:56401600-56402800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr3:56401600-56405400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:56401800-56405200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:56401800-56405200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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