Variant report

Variant	rs4974210
Chromosome Location	chr3:56422906-56422907
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11130516	0.84[ASN][1000 genomes]
rs11707219	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708654	0.83[ASN][1000 genomes]
rs11710335	0.83[EUR][1000 genomes]
rs11711928	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11713347	0.82[EUR][1000 genomes]
rs11718333	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11718664	0.80[EUR][1000 genomes]
rs11920229	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11921059	0.81[EUR][1000 genomes]
rs11924629	0.81[EUR][1000 genomes]
rs11929325	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13078566	0.80[EUR][1000 genomes]
rs13083082	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13089019	0.83[EUR][1000 genomes]
rs13094881	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13098894	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17825409	0.84[ASN][1000 genomes]
rs17825415	0.84[ASN][1000 genomes]
rs17825421	0.84[ASN][1000 genomes]
rs1947348	0.86[ASN][1000 genomes]
rs2316898	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34018952	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34158034	0.83[EUR][1000 genomes]
rs34407400	0.84[ASN][1000 genomes]
rs34825657	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34967455	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35033578	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35835987	0.81[EUR][1000 genomes]
rs35866364	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35947588	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35977673	0.81[EUR][1000 genomes]
rs4076863	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4246674	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4246675	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4475006	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4974136	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4974200	0.80[EUR][1000 genomes]
rs4974202	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4974204	0.81[EUR][1000 genomes]
rs4974205	0.81[EUR][1000 genomes]
rs4974206	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55952137	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60814962	0.82[EUR][1000 genomes]
rs62255862	0.84[ASN][1000 genomes]
rs62255863	0.84[ASN][1000 genomes]
rs6445787	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6776240	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6802458	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611307	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7615409	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628943	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7641157	0.86[ASN][1000 genomes]
rs7641435	0.86[ASN][1000 genomes]
rs7644975	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876816	chr3:56422771-56457705	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56422400-56427800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:56422600-56423800	Enhancers	Placenta Amnion	Placenta Amnion

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