Variant report

Variant	rs62255862
Chromosome Location	chr3:56375714-56375715
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11130508	0.85[ASN][1000 genomes]
rs11130509	0.85[ASN][1000 genomes]
rs11130515	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11130516	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706502	0.85[AMR][1000 genomes]
rs11707219	0.84[ASN][1000 genomes]
rs11708654	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11714882	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11715774	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11716710	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11718333	0.81[ASN][1000 genomes]
rs13076397	0.82[ASN][1000 genomes]
rs13085545	0.85[ASN][1000 genomes]
rs13093276	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13094881	0.80[ASN][1000 genomes]
rs13096861	0.85[ASN][1000 genomes]
rs13098894	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1349615	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17825379	0.82[ASN][1000 genomes]
rs17825409	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17825415	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17825421	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869156	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1947348	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2123183	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2316898	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2873303	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34407400	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34750355	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35033578	0.82[ASN][1000 genomes]
rs35866364	0.81[ASN][1000 genomes]
rs35958142	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4246674	0.84[ASN][1000 genomes]
rs4246675	0.82[ASN][1000 genomes]
rs4475006	0.83[ASN][1000 genomes]
rs4974133	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4974134	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4974136	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4974202	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4974210	0.84[ASN][1000 genomes]
rs55952137	0.82[ASN][1000 genomes]
rs56229179	0.83[AMR][1000 genomes]
rs62255863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255872	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6776240	0.83[ASN][1000 genomes]
rs6777792	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6781931	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6784908	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6790858	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6791227	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6793746	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6797275	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6802458	0.84[ASN][1000 genomes]
rs7611307	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7615409	0.84[ASN][1000 genomes]
rs7619653	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7628943	0.83[ASN][1000 genomes]
rs7637946	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7638645	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7639248	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7641043	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7641157	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7641435	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs766695	0.81[AMR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56374600-56376600	Weak transcription	Fetal Brain Female	brain
2	chr3:56374600-56377800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links