Variant report

Variant	rs56229179
Chromosome Location	chr3:56333309-56333310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11130508	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130509	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130516	0.82[AMR][1000 genomes]
rs11706502	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11708654	0.83[AMR][1000 genomes]
rs11714882	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11715774	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11716710	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13076397	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13085545	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13096861	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17825379	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17825409	0.83[AMR][1000 genomes]
rs17825415	0.83[AMR][1000 genomes]
rs17825421	0.83[AMR][1000 genomes]
rs1869156	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1947348	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2873303	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34407400	0.83[AMR][1000 genomes]
rs34502592	0.81[EUR][1000 genomes]
rs34699897	0.83[EUR][1000 genomes]
rs34715192	0.81[EUR][1000 genomes]
rs34718158	0.89[EUR][1000 genomes]
rs34750355	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35958142	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4325896	0.87[EUR][1000 genomes]
rs4974133	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62253617	0.89[EUR][1000 genomes]
rs62255862	0.83[AMR][1000 genomes]
rs62255863	0.83[AMR][1000 genomes]
rs73086420	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7619653	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7639248	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7641157	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7641435	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56323200-56336800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:56323200-56337000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:56323400-56336600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:56323600-56336600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:56325200-56337200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:56326200-56336600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:56326200-56337200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:56328800-56336400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:56330000-56336400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:56330200-56336200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:56330400-56336200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:56330600-56336800	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:56331600-56341800	Weak transcription	Fetal Heart	heart

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