Variant report

Variant	rs73086420
Chromosome Location	chr3:56320413-56320414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11130508	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11130509	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11706502	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11714882	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11715774	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11716710	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13076397	0.88[EUR][1000 genomes]
rs13085545	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13096861	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17825379	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1869156	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1947348	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2873303	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34718158	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34750355	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35958142	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4325896	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4974133	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56229179	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62253617	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7619653	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7639248	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7641157	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7641435	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56316400-56322600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:56318600-56324000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:56319200-56323200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:56319200-56323200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:56319200-56323400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:56319600-56321800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:56319600-56323600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:56319800-56321000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:56319800-56321400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:56319800-56321600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:56319800-56321800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:56319800-56324400	Weak transcription	HUVEC	blood vessel
13	chr3:56320000-56321000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:56320000-56321600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:56320000-56324800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:56320200-56320600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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