Variant report

Variant	rs11706502
Chromosome Location	chr3:56322106-56322107
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11130508	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130509	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130516	0.84[AMR][1000 genomes]
rs11708654	0.85[AMR][1000 genomes]
rs11714882	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11715774	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11716710	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11719222	0.81[EUR][1000 genomes]
rs13076397	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13085545	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13096861	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17825379	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17825409	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17825415	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17825421	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1869156	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1947348	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2167618	0.87[AFR][1000 genomes]
rs2873303	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34407400	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34502592	0.81[EUR][1000 genomes]
rs34699897	0.83[EUR][1000 genomes]
rs34715192	0.81[EUR][1000 genomes]
rs34718158	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34750355	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35958142	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4325896	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4585165	0.86[AFR][1000 genomes]
rs4974133	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56229179	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62253617	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62255862	0.85[AMR][1000 genomes]
rs62255863	0.85[AMR][1000 genomes]
rs6762680	0.87[AFR][1000 genomes]
rs6777792	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6781931	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6784908	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6793746	0.82[EUR][1000 genomes]
rs6797275	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73086420	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7619653	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7638645	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7639248	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7641157	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7641435	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs766695	0.81[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56316400-56322600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr3:56318600-56324000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:56319200-56323200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:56319200-56323200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:56319200-56323400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:56319600-56323600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:56319800-56324400	Weak transcription	HUVEC	blood vessel
8	chr3:56320000-56324800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:56320600-56322400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:56321000-56323400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:56321600-56322400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:56321600-56322600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:56321600-56323600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:56321800-56322400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr3:56322000-56323000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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