Variant report

Variant	rs17825379
Chromosome Location	chr3:56325247-56325248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11130508	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130509	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130510	0.82[AMR][1000 genomes]
rs11130512	0.82[AMR][1000 genomes]
rs11130516	0.82[ASN][1000 genomes]
rs11706502	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11708280	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11708654	0.83[ASN][1000 genomes]
rs11712446	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11714882	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11715774	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11715860	0.82[AMR][1000 genomes]
rs11716710	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11719222	0.86[EUR][1000 genomes]
rs11919266	0.81[EUR][1000 genomes]
rs13061518	0.82[AMR][1000 genomes]
rs13076397	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13085545	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13096861	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17825409	0.82[ASN][1000 genomes]
rs17825415	0.82[ASN][1000 genomes]
rs17825421	0.82[ASN][1000 genomes]
rs1869156	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1947348	0.83[ASN][1000 genomes]
rs2123181	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2873303	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34392996	0.80[EUR][1000 genomes]
rs34407400	0.82[ASN][1000 genomes]
rs34502592	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34699897	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34715192	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34718158	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34750355	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35110829	0.85[EUR][1000 genomes]
rs35659930	0.81[EUR][1000 genomes]
rs35958142	0.89[EUR][1000 genomes]
rs36044157	0.86[AMR][1000 genomes]
rs4325896	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974133	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4974193	0.82[AMR][1000 genomes]
rs56135751	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56229179	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62253617	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255862	0.82[ASN][1000 genomes]
rs62255863	0.82[ASN][1000 genomes]
rs73086420	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs755322	0.82[CEU][hapmap]
rs7619653	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7639248	0.89[EUR][1000 genomes]
rs7641157	0.83[ASN][1000 genomes]
rs7641435	0.83[ASN][1000 genomes]
rs9799155	0.82[AMR][1000 genomes]
rs9810491	0.85[EUR][1000 genomes]
rs9867216	0.85[EUR][1000 genomes]
rs9873480	0.85[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56322400-56325400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:56323000-56325400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:56323200-56325400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:56323200-56325800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:56323200-56336800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:56323200-56337000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:56323400-56326400	Enhancers	GM12878-XiMat	blood
8	chr3:56323400-56336600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:56323600-56336600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:56324800-56325400	Enhancers	HSMM	muscle
11	chr3:56324800-56325800	Enhancers	NH-A	brain
12	chr3:56324800-56326200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:56324800-56326200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:56324800-56326400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:56325000-56326400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:56325000-56326400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:56325200-56325600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:56325200-56326200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:56325200-56326400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr3:56325200-56327000	Enhancers	HUVEC	blood vessel
21	chr3:56325200-56337200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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