Variant report

Variant	rs13061518
Chromosome Location	chr3:56351743-56351744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11130508	0.81[AMR][1000 genomes]
rs11130509	0.81[AMR][1000 genomes]
rs11130510	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130513	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130515	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11708280	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11708654	0.80[ASN][1000 genomes]
rs11710376	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710542	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11711109	0.80[ASN][1000 genomes]
rs11711928	0.83[ASN][1000 genomes]
rs11712446	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11715860	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11718664	0.88[ASN][1000 genomes]
rs11919266	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11922800	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11929325	0.83[ASN][1000 genomes]
rs13076397	0.81[AMR][1000 genomes]
rs13085545	0.81[AMR][1000 genomes]
rs13093276	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13096861	0.81[AMR][1000 genomes]
rs17825379	0.82[AMR][1000 genomes]
rs1947348	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2123181	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34018952	0.83[ASN][1000 genomes]
rs34392996	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34502592	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34699897	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34713833	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34715192	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34718158	0.82[AMR][1000 genomes]
rs34770968	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34825657	0.83[ASN][1000 genomes]
rs34967455	0.83[ASN][1000 genomes]
rs35110829	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35215252	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35659930	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35947588	0.81[ASN][1000 genomes]
rs36044157	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4325896	0.82[AMR][1000 genomes]
rs4974134	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4974138	0.80[ASN][1000 genomes]
rs4974139	0.80[ASN][1000 genomes]
rs4974193	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974197	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974200	0.88[ASN][1000 genomes]
rs4974211	0.80[ASN][1000 genomes]
rs4974212	0.80[ASN][1000 genomes]
rs56135751	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60814962	0.80[ASN][1000 genomes]
rs62253617	0.82[AMR][1000 genomes]
rs62253627	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255872	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6765986	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790858	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6791227	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7610959	0.88[ASN][1000 genomes]
rs7637430	0.80[ASN][1000 genomes]
rs7637946	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7641157	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7641435	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9799155	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56344000-56357400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:56349200-56357400	Weak transcription	Right Atrium	heart
3	chr3:56349200-56358000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:56349400-56353400	Weak transcription	Fetal Heart	heart
5	chr3:56350200-56354600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:56350200-56354800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:56350200-56356000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:56350400-56354400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:56351200-56354800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:56351400-56354800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:56351400-56355000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:56351600-56352600	Weak transcription	Fetal Brain Male	brain
13	chr3:56351600-56353600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links