Variant report

Variant	rs34770968
Chromosome Location	chr3:56291015-56291016
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11130510	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130512	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130513	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130515	0.83[ASN][1000 genomes]
rs11708280	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11710376	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11710542	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11712446	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11715860	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11917333	0.82[EUR][1000 genomes]
rs11919266	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11922083	0.89[EUR][1000 genomes]
rs11922800	0.85[EUR][1000 genomes]
rs13061518	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13064390	0.88[EUR][1000 genomes]
rs13065193	0.88[EUR][1000 genomes]
rs13065887	0.88[EUR][1000 genomes]
rs13077690	0.87[EUR][1000 genomes]
rs13093276	0.83[ASN][1000 genomes]
rs1452220	0.85[EUR][1000 genomes]
rs1452222	0.85[EUR][1000 genomes]
rs2123181	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34392996	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34502592	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34699897	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34713833	0.83[ASN][1000 genomes]
rs34715192	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35110829	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35215252	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35659930	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36044157	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4974124	0.84[EUR][1000 genomes]
rs4974127	0.89[EUR][1000 genomes]
rs4974128	0.89[EUR][1000 genomes]
rs4974134	0.83[ASN][1000 genomes]
rs4974182	0.85[EUR][1000 genomes]
rs4974193	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4974197	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56135751	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62253627	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62255872	0.83[ASN][1000 genomes]
rs6765986	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6790858	0.83[ASN][1000 genomes]
rs6791227	0.83[ASN][1000 genomes]
rs755322	0.83[EUR][1000 genomes]
rs7626886	0.88[EUR][1000 genomes]
rs7627149	0.87[EUR][1000 genomes]
rs7637946	0.83[ASN][1000 genomes]
rs9799155	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56272800-56291400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56288800-56291400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:56288800-56311400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:56289000-56291600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:56290000-56291400	Weak transcription	Fetal Kidney	kidney
6	chr3:56290200-56291400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:56290200-56291400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:56290200-56303200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:56290800-56291200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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