Variant report

Variant	rs11130510
Chromosome Location	chr3:56337024-56337025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11130508	0.81[AMR][1000 genomes]
rs11130509	0.81[AMR][1000 genomes]
rs11130512	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130513	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130515	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11708280	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11710376	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11710542	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11712446	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11715860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718664	0.83[ASN][1000 genomes]
rs11919266	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11922800	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13061518	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13076397	0.81[AMR][1000 genomes]
rs13085545	0.81[AMR][1000 genomes]
rs13093276	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13096861	0.81[AMR][1000 genomes]
rs17825379	0.82[AMR][1000 genomes]
rs1947348	0.80[EUR][1000 genomes]
rs2123181	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34392996	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34502592	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34699897	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34713833	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34715192	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34718158	0.82[AMR][1000 genomes]
rs34770968	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35110829	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35215252	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35659930	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36044157	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4325896	0.82[AMR][1000 genomes]
rs4974134	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974197	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974200	0.83[ASN][1000 genomes]
rs56135751	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62253617	0.82[AMR][1000 genomes]
rs62253627	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62255872	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6765986	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6790858	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6791227	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs755322	0.86[CEU][hapmap]
rs7610959	0.83[ASN][1000 genomes]
rs7637946	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7641157	0.80[EUR][1000 genomes]
rs7641435	0.80[EUR][1000 genomes]
rs9799155	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11130510	C3orf51	cis	cerebellum	SCAN
rs11130510	ERC2	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56325200-56337200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:56326200-56337200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:56331600-56341800	Weak transcription	Fetal Heart	heart
4	chr3:56336200-56337800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:56336200-56337800	Enhancers	GM12878-XiMat	blood
6	chr3:56336200-56338200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:56336200-56338400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:56336400-56337800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:56336400-56337800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:56336400-56338400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:56336600-56337600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr3:56336600-56337800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:56336600-56337800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:56336600-56338800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr3:56336800-56337800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:56336800-56337800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:56336800-56338200	Enhancers	HUVEC	blood vessel
18	chr3:56337000-56337600	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:56337000-56338400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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